Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M16 RNAprocessing Mitochondrion_UniqueNum	BreastC_M16 RNAprocessing Mitochondrion_pVal	BreastC_M16 RNAprocessing Mitochondrion_Unique	ColonC_M23 Chr7_UniqueNum	ColonC_M23 Chr7_pVal	ColonC_M23 Chr7_Unique
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP	4	INTS1|MAD1L1|MAFK|SMURF1	7.30761483824e-05	30	0.000146152296557	AP2S1|BAX|CNOT3|CNPY3|DMPK|EPN1|GRWD1|GYS1|KDELR1|MBOAT7|MRPS12|NFKBIB|NOSIP|NR1H2|NUCB1|NUDC|PAF1|PAK4|PPP1R13L|PSMD8|RUVBL2|SIRT2|SIX5|SLC1A5|SNRPD2|STRN4|TSEN34|U2AF2|ZNF444|ZNF580	26	2.07836867339e-13	AP4M1|ARPC1A|ARPC1B|ASL|ASNS|BET1|CBLL1|CRCP|DLD|FIS1|GARS|GNB2|KCTD7|LMTK2|PLOD3|PON2|PON3|SEM1|SLC12A9|SLC25A13|SYPL1|TAF6|TMEM248|TRRAP|ZKSCAN5|ZNHIT1
GRADE_COLON_CANCER_UP	6	BRAT1|DNAAF5|EIF3B|INTS1|MAFK|YKT6	7.56078442219e-06	108	4.71823073667e-16	AARS2|ADAT3|ALG3|AP1M1|ARHGDIA|ASNA1|ATF6B|BMS1|C19ORF53|CALR|CARM1|CDK16|CLIC1|CNOT11|COPS7A|COX6B1|DMAC2|ECSIT|EEFSEC|EHMT2|FAM27C|FBXO24|FKBP8|FOSL1|GADD45GIP1|GDNF|GPKOW|GPX4|GTF2H4|HM13|HSPBP1|IDH3G|ILF3|IRAK1|ITPR3|KHSRP|LPCAT3|LYPLA2|MAP1S|MAPK13|MGAT5|MIB2|MLLT1|MRPL4|NAA10|NDUFA7|NDUFB11|NDUFV3|NFKBIL1|NOC2L|NOL7|NOP16|NUCB1|OAZ1|PDCD2L|PFDN6|PKN1|PLPP2|POLR2I|PPP2R1A|PRDX2|PRELID1|PRKCSH|PSMC4|PSMD8|RAD23A|RPL36|RPN1|RPP21|RPS8|S100A10|S100A11|SAMD1|SEC13|SEC61A1|SF3A2|SF3A3|SGTA|SH3GL1|SLC27A5|SNHG17|SNRPC|SNRPD2|STAT6|STX10|TECR|THOP1|TMED1|TMEM222|TMEM259|TMSB10|TPT1P8|TRIM28|TRIR|TRPM2|TTYH3|TXLNA|U2AF1|U2AF2|UBA1|USF2|VASN|WASF2|WDR74|WDR83OS|WRNIP1|YBX1|ZNF593	30	1.51215688439e-05	ABHD11|ATP6V1F|CHCHD2|CRCP|EIF4H|ESYT2|EZH2|GARS|GNB2|ICA1|MCM7|MDH2|NDUFA4|PDAP1|PEX1|PLOD3|PMS2P2|POLD2|POR|PPIA|SEM1|SLC12A9|SND1|SOX9|SSBP1|UBE2D4|VKORC1L1|ZC3HAV1L|ZNF3|ZNHIT1
GSE14908_ATOPIC_VS_NONATOPIC_PATIENT_RESTING_CD4_TCELL_DN	1	MRM2	0.000757880262514	23	0.000872028158718	AURKAIP1|BDH1|BMS1|CCND3|CD320|CLASP1|COX6B1|EXOSC5|FKBP4|FZR1|GATAD2A|MLLT1|MXD3|NDUFA11|NMNAT1|POLR2H|POLRMT|PSMC4|PWP2|SURF4|TOE1|U2AF1|WIZ	11	0.00064373236631	COX19|CRCP|GUSB|LANCL2|LRWD1|NDUFB2|PSPH|RBM28|SEPT7|SSBP1|TBL2
GSE17721_CTRL_VS_LPS_4H_BMDC_UP	4	BRAT1|LIMK1|RAC1|ZMIZ2	5.81839912798e-05	23	6.54435064324e-05	ACOT13|BDH1|C6ORF136|C19ORF53|CPT1A|DTNBP1|ELOF1|FAM50A|GCDH|HCFC1|HM13|HNRNPUL2|KLF16|LDLRAP1|MGAT5|MIDN|MRPL2|MRPL11|MYO9B|NCOR2|NDUFA7|RPA2|TMED9	10	5.09244761272e-05	ALKBH4|CRCP|MCM7|MDH2|NDUFA4|NUDCD3|OPN3|ORC5|STARD3NL|TBL2
GSE19825_NAIVE_VS_IL2RAHIGH_DAY3_EFF_CD8_TCELL_DN	1	EIF3B	0.000640346584882	24	0.000471492872203	ATP13A2|BAX|C6ORF136|CLPTM1|ECE2|GADD45GIP1|GIT1|MBOAT7|MCOLN1|MED25|MGAT4B|MRPL4|MRPS18A|MTOR|NAA10|RNF126|SCLY|SLC35C1|SRF|TRAPPC5|TRNAU1AP|TSEN2|WDTC1|YIPF3	11	0.000809200297561	AP1S1|COPS6|GARS|GTF2IRD2|IMMP2L|ING3|LRWD1|MPP6|SND1|TAF6|VPS50
Human Colon_Grade07_1102genes (17210682-SuppTable3)	5	BRAT1|INTS1|KDELR2|MAFK|YKT6	2.83866031037e-05	98	3.03789665736e-12	AARS2|ALG3|ANXA2P1|ANXA2P3|AP1M1|ARHGDIA|ASNA1|ATF6B|B4GALT2|BMS1|CALR|CARM1|CLIC1|CNOT11|COPS7A|COX6B1|EEFSEC|EHMT2|FBXL8|FBXO24|FKBP8|FOSL1|GADD45GIP1|GDNF|GPKOW|GPX4|GTF2H4|HM13|HSPBP1|IDH3G|ILF3|IRAK1|ITPR3|KHSRP|LYPLA2|MAP1S|MAPK13|MGAT5|MIB2|MLLT1|MRPL4|NDUFA7|NDUFB11|NDUFV3|NFKBIL1|NOC2L|NUCB1|OAZ1|PFDN6|PKN1|PLPP2|POLR1C|POLR2I|PPP2R1A|PRDX2|PRKCSH|PSMC4|PSMD8|RAD23A|RPL36|RPL41|RPN1|RPP21|RPS8|S100A10|S100A11|SAMD1|SCAMP4|SEC13|SEC61A1|SF3A2|SF3A3|SGTA|SH3GL1|SLC27A5|SMYD5|SNRPC|SNRPD2|STAT6|STX10|TBC1D17|THOP1|TMED1|TMEM222|TMEM259|TMSB10|TRIM28|TRPM2|TTYH3|TXLNA|U2AF1|U2AF2|UBA1|USF2|VASN|WASF2|WRNIP1|ZNF593	29	5.67732031695e-05	ABHD11|ATP6V1F|BRI3|CHCHD2|CRCP|EIF4H|ESYT2|EZH2|GARS|GNB2|ICA1|MCM7|MDH2|NDUFA4|PDAP1|PEX1|PLOD3|POLD2|POR|PPIA|REPIN1|SEM1|SLC12A9|SND1|SOX9|SSBP1|VKORC1L1|ZNF3|ZNHIT1
MORF_AP2M1	1	RAC1	0.000186580252947	33	2.10941428655e-07	ACTN4|AP2M1|AP2S1|AP3D1|ARHGDIA|C21ORF33|CALR|CLIC1|COPE|COX6B1|CSNK2B|DDX49|DNAJC8|GPX4|HNRNPAB|HNRNPUL1|HSP90AB1|KDELR1|LYPLA2|MAP2K2|MRPS12|P4HB|POLR2H|POLR2I|PPP2R1A|PSMD8|RER1|TBCB|TMED9|TMEM147|UBA1|VPS52|WBP2	12	0.000372949564466	ARF5|ATP6V1F|BUD31|CBX3|COPS6|GNB2|IMPDH1|PDAP1|PLOD3|PPIA|RHEB|SLC4A2
MORF_BUB3	1	NUDT1	0.000247747002842	44	7.65131871841e-10	BAG6|CAD|CALM3|CHERP|CLPP|CSK|CSNK2B|DDX49|DNAJC8|DNAJC11|EIF4EBP2|GLO1|HADHA|HCFC1|HDAC1|HNRNPAB|HNRNPUL1|IDH3G|ILF3|KHSRP|LSM2|LSM7|MAP2K2|MRPS18B|NAA10|NUDC|PARK7|POLR2I|PPP2R1A|PRPF31|PSMD8|RAD23A|RPA2|RUVBL2|SAFB|SF3A2|SLC1A5|SRM|SSRP1|TEX261|THOP1|TMED9|TRIM28|U2AF1	14	0.000495493240553	BAZ1B|CBX3|CYCS|DGUOK|EIF4H|GARS|H2AFV|IMPDH1|MCM7|MTCP1|POM121|RHEB|SSBP1|TNPO3
MORF_CSNK2B	2	EIF3B|RAC1	2.63132493888e-06	52	2.63479879574e-14	ACOT13|AP2M1|AP2S1|AP3D1|ARHGDIA|BAG6|CALM3|CHERP|CLPP|COPE|COX6B1|CSNK2B|DAP|DDX49|EIF2B4|EIF4G1|GLO1|GPX4|HADHA|HDAC1|HNRNPAB|HNRNPUL1|IDH3G|ILF3|KDELR1|LAGE3|LSM2|MAP2K2|MRPS18B|NAA10|NHP2|PARK7|POLR2I|PPP2R1A|PRPF31|PSMD8|PTOV1|RAD23A|RBM14|RER1|RUVBL2|SEC13|SF3A2|SLC1A5|SNRPD2|TECR|TMED9|TMEM147|TRIM28|U2AF1|UBA1|VPS52	17	5.26264985142e-06	CBX3|COA1|CYCS|DGUOK|EIF4H|GGCT|GNB2|H2AFV|IMPDH1|MCM7|PDAP1|RFC2|RHEB|SEM1|SLC4A2|SSBP1|SYPL1
MORF_GNB1	1	NUDT1	2.34000228206e-05	43	3.54363048276e-08	AP3D1|BAG6|CALM3|CLPP|COPE|CSK|CSNK2B|DDX49|DGKZ|DNAJC8|EIF4EBP2|HADHA|HCFC1|HDAC1|HNRNPAB|HNRNPUL1|IDH3G|ILF3|KHSRP|LSM2|LSM7|MAP2K2|MYDGF|NCOR2|NDUFA7|NUDC|PARK7|PIN1|PKN1|PPP2R1A|PRPF31|RAD23A|RPN1|RUVBL2|SAFB|SF3A2|TEX261|THOP1|TMED9|TREX2|TRIM28|TXLNA|U2AF1	17	4.67646093363e-05	BAZ1B|CBX3|DGUOK|EIF4H|GARS|GNB2|GUSB|H2AFV|IMPDH1|MTCP1|POM121|RHEB|SEPT7|SND1|SSBP1|TAX1BP1|TNPO3
MORF_GPX4	1	RAC1	4.74104509936e-05	17	1.38075662757e-09	AP2M1|AP2S1|COPE|COX6B1|CSNK2B|DAP|GPX4|KDELR1|MAP2K2|PPP2R1A|PSMD8|RER1|TECR|TMED9|TMEM147|UBA1|WBP2	6	9.48195212305e-05	ARF5|ATP6V1F|FASTK|GNB2|PDAP1|RHEB
MORF_RAC1	1	RAC1	3.3118446004e-06	31	1.35937985504e-06	ACTN4|AP2M1|AP2S1|CDK16|CENPB|CNOT3|COPS7A|CSNK1G2|CSNK2B|DAP|GORASP2|GPX4|HNRNPAB|IDH3G|ILVBL|KDELR1|MAP2K2|MEA1|MRPS18B|PCBD1|POLR2I|PPP1R11|PPP2R1A|PSMD8|RAF1|SEC13|SLC10A3|TMED9|TMEM147|UBA1|WBP2	15	5.26430934577e-06	ARF5|ATP6V1F|COA1|CYCS|GGCT|MTCP1|PDAP1|PLOD3|PSMC2|RHEB|SEC61G|SEM1|SLC4A2|SYPL1|UBE3C
MORF_RAD23A	2	EIF3B|NUDT1	3.73913040143e-05	52	7.11836913903e-11	AP2S1|AP3D1|BAG6|CAD|CALM3|CHERP|CLPP|COPE|CSK|CSNK2B|DDX49|DGKZ|DNAJC8|DNAJC11|EIF4EBP2|FARSA|GLO1|HADHA|HDAC1|HNRNPAB|HNRNPUL1|IDH3G|ILF3|IRAK1|KHSRP|LAGE3|LSM2|MAP2K2|MRPS12|MRPS18B|NAA10|NDUFA7|NPM3|NUDC|PARK7|PKN1|POLR2I|PPP2R1A|PRPF31|RAD23A|RNF126|RPN1|RUVBL2|SAFB|SF3A2|SLC1A5|TEX261|THOP1|TMED9|TREX2|TRIM28|U2AF1	17	7.4782536845e-05	BAZ1B|CBX3|CYCS|DGUOK|EIF4H|GARS|GNB2|H2AFV|IMPDH1|KRIT1|MTCP1|NUP205|POM121|RHEB|SEM1|SSBP1|TNPO3
MORF_RAN	1	RAC1	0.000472369392578	29	0.00040039091268	AP2M1|AP2S1|C21ORF33|COPE|COX6B1|CSNK2B|DDX49|DNAJC8|EBP|HDAC1|HNRNPAB|HNRNPUL1|HSP90AB1|LSM2|MRPS12|PARK7|POLR2H|POLR2I|PPP2R1A|PSMD8|RAD23A|RPS10|RUVBL2|SNRPD2|TMEM147|TRIM28|U2AF1|UBA1|YBX1	13	0.000544347872476	ATP6V1F|CBX3|COA1|COPS6|CYCS|EIF4H|H2AFV|PDAP1|PPIA|PSMA2|RHEB|SEM1|SSBP1
MORF_SKP1A	2	RAC1|WIPI2	0.000344928713518	23	0.000471492872203	AP2M1|AP2S1|CALM3|COPE|COX6B1|CSNK2B|DAP|DDX49|HNRNPAB|HNRNPUL1|ILF3|MAD2L1BP|PARK7|PPP2R1A|PSMD8|RAD23A|RER1|SEC13|TRIM28|U2AF1|UBA1|VPS52|WBP2	11	0.000218364554832	BUD31|CBX3|COA1|EIF4H|GGCT|PDAP1|PSMA2|PSMC2|RHEB|SEM1|SYPL1
MORF_SOD1	3	AIMP2|EIF3B|RAC1	7.74288768652e-05	30	0.000112483158412	ACOT13|AP2M1|AP2S1|C21ORF33|CALM3|CHERP|CSNK2B|DAP|DDX49|EIF2B4|GLO1|HNRNPAB|ILF3|LSM2|MAP2K2|MRPS18B|NHP2|NUDC|PARK7|POLR2I|PPP2R1A|PRPF31|PSMD8|RAD23A|RUVBL2|SEC13|TECR|TMEM147|TRIM28|U2AF1	14	4.23745953185e-05	CBX3|COA1|CYCS|DGUOK|DLD|EIF4H|GGCT|PSMA2|RHEB|SEC61G|SEM1|SLC4A2|SSBP1|SYPL1
NIKOLSKY_BREAST_CANCER_7P22_AMPLICON	13	BRAT1|C7ORF50|EIF3B|FOXK1|GNA12|INTS1|MAD1L1|MAFK|MRM2|NUDT1|PSMG3|WIPI2|ZFAND2A	1.73260957695e-11	3	3.46521915384e-11	FBXL18|GET4|TTYH3	5	5.6878562799e-22	ADAP1|COX19|IQCE|LFNG|TNRC18
ROVERSI_GLIOMA_COPY_NUMBER_UP	1	MDK	0.000427838887589	16	4.01811073954e-05	CBLC|CLPTM1|DGKZ|ERCC1|ERCC2|MAPK8IP1|MARK4|PACSIN3|PPP1R13L|SIPA1L3|SLC27A5|SLC35C1|TRIM28|ZBTB45|ZNF324|ZNF408	7	0.000815496667783	ABCF2|ORC5|PMS2P2|PRKAG2|PTPRN2|RHEB|SYPL1
chr7p13	7	CCM2|DDX56|PURB|SNORA9|URGCP|YKT6|ZMIZ2	1.3899170267e-05	3	2.7798340534e-05	DBNL|OGDH|TBRG4	12	2.07503628274e-23	AUTS2|COA1|H2AFV|HUS1|NUDCD3|POLD2|POLM|PPIA|PSMA2|SNORA5B|TMED4|UBE2D4
chr7p22	19	AIMP2|C7ORF26|C7ORF50|DNAAF5|EIF2AK1|EIF3B|FOXK1|GNA12|INTS1|MAD1L1|MAFK|MRM2|NUDT1|PRKAR1B|RAC1|RNF216|USP42|WIPI2|ZFAND2A	7.1789268603e-12	2	1.43578537206e-11	FBXL18|TTYH3	14	8.3871483085e-40	CCZ1B|COX19|DAGLB|FAM220A|ICA1|IQCE|LFNG|MIOS|PMS2|RALA|RBAK|RPA3|TNRC18|ZDHHC4
